No. words: 628; after pruning: 602


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    1   -4.7 -4.7 (1,1:264)  185  7.58 0.38 0.00  BE6055103At01P078H03P078H091F1_084.ab1        1   264 (67)  C BE6055103At01P078H03P078H091R1_084.ab1   (31)   266     2 *
  Worst pair: offset 1 
LLR breakdown: discreps: -9.9 (<20 part: -9.9 (#=21), >20:0.0 (#=0); in HQ: -9.9, out HQ 0.0), match: 5.4  trail: -0.3  total: -4.8  185  7.58 0.38 0.00  BE6055103At01P078H03P078H091F1_084.ab1        1   264 (67)  C BE6055103At01P078H03P078H091R1_084.ab1   (31)   266     2 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.7       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  72 nodes

 38 str. conn. components

Path
    1  C BE6055103At01P078H03P078H091R1_084.ab1   297 
   44    BE6055103At01P078H03P078H091F1_084.ab1    12 
  212  C BE6055103At01P078H03P078H091R1_084.ab1    86 
  220    BE6055103At01P078H03P078H091F1_084.ab1   188 
  273  C BE6055103At01P078H03P078H091R1_084.ab1    25 
  277    BE6055103At01P078H03P078H091F1_084.ab1   245 
Contig length: old 363, new 363

Contig length: old 363, new 363
New start: 0 
S Change at: 204; seg lengths: entry 1, contig 1