No. words: 1308; after pruning: 1282


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Rjct: (2)    0   -4.9 -4.9 (1,1:742)  481  4.07 0.00 0.00  BE606960Ln06P003E04E101F1_08.ab1       99   663 (0)  C BE606960Ln06P003E04E101R1_08.ab1   (0)   645    81 *
  Worst pair: offset 0 
LLR breakdown: discreps: -17.0 (<20 part: -17.0 (#=23), >20:0.0 (#=0); in HQ: -17.0, out HQ 0.0), match: 12.1  total: -4.9  481  4.07 0.00 0.00  BE606960Ln06P003E04E101F1_08.ab1       99   663 (0)  C BE606960Ln06P003E04E101R1_08.ab1   (0)   645    81 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.9       0        1

Gap   # merges  # failures
 size
 0       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BE606960Ln06P003E04E101R1_08.ab1     1 
Contig length: old 645, new 645

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BE606960Ln06P003E04E101F1_08.ab1     1 
Contig length: old 663, new 663