No. words: 1390; after pruning: 1364


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -3.2 -3.2 (1,1:751)  552  3.61 0.00 0.00  BE606960Ln07P003E04E101F1_07.ab1       35   672 (0)  C BE606960Ln07P003E04E101R1_07.ab1   (0)   718    81 *
  Worst pair: offset 0 
LLR breakdown: discreps: -16.9 (<20 part: -16.9 (#=23), >20:0.0 (#=0); in HQ: -16.9, out HQ 0.0), match: 13.7  total: -3.2  552  3.61 0.00 0.00  BE606960Ln07P003E04E101F1_07.ab1       35   672 (0)  C BE606960Ln07P003E04E101R1_07.ab1   (0)   718    81 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.2       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  258 nodes

 131 str. conn. components

Path
    1    BE606960Ln07P003E04E101F1_07.ab1     1 
   42  C BE606960Ln07P003E04E101R1_07.ab1   711 
   62    BE606960Ln07P003E04E101F1_07.ab1    62 
   66  C BE606960Ln07P003E04E101R1_07.ab1   687 
   70    BE606960Ln07P003E04E101F1_07.ab1    70 
   78  C BE606960Ln07P003E04E101R1_07.ab1   675 
  101    BE606960Ln07P003E04E101F1_07.ab1   101 
  113  C BE606960Ln07P003E04E101R1_07.ab1   640 
  133    BE606960Ln07P003E04E101F1_07.ab1   133 
  141  C BE606960Ln07P003E04E101R1_07.ab1   612 
  149    BE606960Ln07P003E04E101F1_07.ab1   149 
  157  C BE606960Ln07P003E04E101R1_07.ab1   596 
  177    BE606960Ln07P003E04E101F1_07.ab1   177 
  181  C BE606960Ln07P003E04E101R1_07.ab1   572 
  185    BE606960Ln07P003E04E101F1_07.ab1   185 
  189  C BE606960Ln07P003E04E101R1_07.ab1   564 
Contig length: old 752, new 752

Contig length: old 752, new 752
New start: 0