No. words: 1002; after pruning: 976


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 5.9 (1,1:344)  319  0.29 0.29 0.29  BE636913Ld04P078B04P078B101F1_071.ab1        5   345 (146)  C BE636913Ld04P078B04P078B101R1_071.ab1   (170)   341     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  164 nodes

 84 str. conn. components

Path
    1  C BE636913Ld04P078B04P078B101R1_071.ab1   511 
  371    BE636913Ld04P078B04P078B101F1_071.ab1   204 
Contig length: old 657, new 658

Contig length: old 658, new 658
New start: 0