No. words: 1098; after pruning: 1072


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.1 (1,1:40)  427  4.74 0.19 0.38  BE636979At02P003F05F111F1_12.ab1       41   567 (0)    BE636979At02P003F05F111R1_12.ab1        1   526 (5) *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  200 nodes

 102 str. conn. components

Path
    1    BE636979At02P003F05F111F1_12.ab1     1 
   44    BE636979At02P003F05F111R1_12.ab1     4 
   56    BE636979At02P003F05F111F1_12.ab1    56 
   60    BE636979At02P003F05F111R1_12.ab1    20 
   73    BE636979At02P003F05F111F1_12.ab1    73 
   81    BE636979At02P003F05F111R1_12.ab1    41 
   89    BE636979At02P003F05F111F1_12.ab1    89 
  102    BE636979At02P003F05F111R1_12.ab1    62 
  106    BE636979At02P003F05F111F1_12.ab1   106 
  110    BE636979At02P003F05F111R1_12.ab1    70 
  126    BE636979At02P003F05F111F1_12.ab1   126 
  159    BE636979At02P003F05F111R1_12.ab1   118 
  163    BE636979At02P003F05F111F1_12.ab1   163 
  198    BE636979At02P003F05F111R1_12.ab1   157 
  218    BE636979At02P003F05F111F1_12.ab1   217 
  242    BE636979At02P003F05F111R1_12.ab1   201 
  274    BE636979At02P003F05F111F1_12.ab1   273 
  282    BE636979At02P003F05F111R1_12.ab1   241 
  286    BE636979At02P003F05F111F1_12.ab1   285 
  290    BE636979At02P003F05F111R1_12.ab1   249 
  310    BE636979At02P003F05F111F1_12.ab1   309 
  314    BE636979At02P003F05F111R1_12.ab1   273 
  328    BE636979At02P003F05F111F1_12.ab1   327 
  348    BE636979At02P003F05F111R1_12.ab1   307 
  384    BE636979At02P003F05F111F1_12.ab1   383 
  400    BE636979At02P003F05F111R1_12.ab1   359 
  412    BE636979At02P003F05F111F1_12.ab1   411 
  448    BE636979At02P003F05F111R1_12.ab1   407 
  460    BE636979At02P003F05F111F1_12.ab1   460 
  464    BE636979At02P003F05F111R1_12.ab1   423 
  477    BE636979At02P003F05F111F1_12.ab1   477 
  481    BE636979At02P003F05F111R1_12.ab1   440 
  490    BE636979At02P003F05F111F1_12.ab1   490 
  504    BE636979At02P003F05F111R1_12.ab1   463 
  508    BE636979At02P003F05F111F1_12.ab1   508 
  516    BE636979At02P003F05F111R1_12.ab1   475 
  524    BE636979At02P003F05F111F1_12.ab1   524 
  561    BE636979At02P003F05F111R1_12.ab1   520 
Contig length: old 571, new 572

Contig length: old 572, new 572
New start: 0 
S Change at: 68; seg lengths: entry 1, contig 1
S Change at: 320; seg lengths: entry 1, contig 1
S Change at: 368; seg lengths: entry 3, contig 3
S Change at: 541; seg lengths: entry 1, contig 1