No. words: 1131; after pruning: 1105


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.0 (1,1:405)  397  0.00 0.00 0.00  BE636993Ld09P027B01P027B071F1_027.ab1        1   406 (171)  C BE636993Ld09P027B01P027B071R1_027.ab1   (148)   406     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  202 nodes

 103 str. conn. components

Path
    1  C BE636993Ld09P027B01P027B071R1_027.ab1   554 
  509    BE636993Ld09P027B01P027B071F1_027.ab1   361 
  517  C BE636993Ld09P027B01P027B071R1_027.ab1    38 
  521    BE636993Ld09P027B01P027B071F1_027.ab1   373 
Contig length: old 725, new 725

Contig length: old 725, new 725
New start: 0