No. words: 1031; after pruning: 1005


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 6.8 (1,1:480)  473  0.00 0.00 0.00  BE637806At02P027C01P027C071F1_085.ab1        3   477 (35)  C BE637806At02P027C01P027C071R1_085.ab1   (40)   479     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C BE637806At02P027C01P027C071R1_085.ab1   519 
   80    BE637806At02P027C01P027C071F1_085.ab1    42 
   84  C BE637806At02P027C01P027C071R1_085.ab1   436 
   88    BE637806At02P027C01P027C071F1_085.ab1    50 
  104  C BE637806At02P027C01P027C071R1_085.ab1   416 
  112    BE637806At02P027C01P027C071F1_085.ab1    74 
  128  C BE637806At02P027C01P027C071R1_085.ab1   392 
  132    BE637806At02P027C01P027C071F1_085.ab1    94 
  144  C BE637806At02P027C01P027C071R1_085.ab1   376 
  152    BE637806At02P027C01P027C071F1_085.ab1   114 
Contig length: old 550, new 550

Contig length: old 550, new 550
New start: 0