No. words: 1299; after pruning: 1273


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 9.1 (1,1:492)  486  0.00 0.00 0.00  BE637806Ld08P027C01P027C071F1_096.ab1        2   489 (166)  C BE637806Ld08P027C01P027C071R1_096.ab1   (152)   492     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C BE637806Ld08P027C01P027C071R1_096.ab1   644 
  248    BE637806Ld08P027C01P027C071F1_096.ab1    97 
  256  C BE637806Ld08P027C01P027C071R1_096.ab1   389 
  300    BE637806Ld08P027C01P027C071F1_096.ab1   149 
  564  C BE637806Ld08P027C01P027C071R1_096.ab1    81 
  568    BE637806Ld08P027C01P027C071F1_096.ab1   417 
Contig length: old 806, new 806

Contig length: old 806, new 806
New start: 0