No. words: 1566; after pruning: 1526


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.9 (1,1:1340)  218  0.44 0.00 0.00  BE637850Ld02P027D01P027D071F1_054.ab1      547   771 (0)  C BE637850Ld02P027D01P027D071R1_054.ab1   (0)   795   571 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  112 nodes

 58 str. conn. components

Path
    1    BE637850Ld02P027D01P027D071F1_054.ab1     1 
  650  C BE637850Ld02P027D01P027D071R1_054.ab1   692 
  654    BE637850Ld02P027D01P027D071F1_054.ab1   654 
  666  C BE637850Ld02P027D01P027D071R1_054.ab1   676 
  678    BE637850Ld02P027D01P027D071F1_054.ab1   678 
  690  C BE637850Ld02P027D01P027D071R1_054.ab1   652 
  706    BE637850Ld02P027D01P027D071F1_054.ab1   706 
  714  C BE637850Ld02P027D01P027D071R1_054.ab1   628 
Contig length: old 1341, new 1341

Contig length: old 1341, new 1341
New start: 0