No. words: 1198; after pruning: 1172


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:620)  487  1.90 0.00 0.00  BF145392As02P078E04P078E101F1_059.ab1        1   525 (0)  C BF145392As02P078E04P078E101R1_059.ab1   (52)   621    97 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C BF145392As02P078E04P078E101R1_059.ab1   673 
   60    BF145392As02P078E04P078E101F1_059.ab1     8 
   76  C BF145392As02P078E04P078E101R1_059.ab1   598 
   80    BF145392As02P078E04P078E101F1_059.ab1    28 
   88  C BF145392As02P078E04P078E101R1_059.ab1   586 
   96    BF145392As02P078E04P078E101F1_059.ab1    44 
  100  C BF145392As02P078E04P078E101R1_059.ab1   574 
  104    BF145392As02P078E04P078E101F1_059.ab1    52 
  108  C BF145392As02P078E04P078E101R1_059.ab1   566 
  208    BF145392As02P078E04P078E101F1_059.ab1   156 
  216  C BF145392As02P078E04P078E101R1_059.ab1   458 
  260    BF145392As02P078E04P078E101F1_059.ab1   208 
  264  C BF145392As02P078E04P078E101R1_059.ab1   410 
Contig length: old 673, new 673

Contig length: old 673, new 673
New start: 0