No. words: 1523; after pruning: 1497


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.8 (1,1:637)  615  0.47 0.00 0.00  BF145392Ld04P078E04P078E101F1_083.ab1        1   638 (103)  C BF145392Ld04P078E04P078E101R1_083.ab1   (144)   638     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C BF145392Ld04P078E04P078E101R1_083.ab1   782 
  164    BF145392Ld04P078E04P078E101F1_083.ab1    20 
  184  C BF145392Ld04P078E04P078E101R1_083.ab1   599 
  195    BF145392Ld04P078E04P078E101F1_083.ab1    51 
  207  C BF145392Ld04P078E04P078E101R1_083.ab1   576 
  219    BF145392Ld04P078E04P078E101F1_083.ab1    75 
  227  C BF145392Ld04P078E04P078E101R1_083.ab1   556 
  231    BF145392Ld04P078E04P078E101F1_083.ab1    87 
  239  C BF145392Ld04P078E04P078E101R1_083.ab1   544 
  243    BF145392Ld04P078E04P078E101F1_083.ab1    99 
  247  C BF145392Ld04P078E04P078E101R1_083.ab1   536 
  255    BF145392Ld04P078E04P078E101F1_083.ab1   111 
  287  C BF145392Ld04P078E04P078E101R1_083.ab1   496 
  291    BF145392Ld04P078E04P078E101F1_083.ab1   147 
  527  C BF145392Ld04P078E04P078E101R1_083.ab1   256 
  623    BF145392Ld04P078E04P078E101F1_083.ab1   479 
  655  C BF145392Ld04P078E04P078E101R1_083.ab1   128 
  695    BF145392Ld04P078E04P078E101F1_083.ab1   551 
  699  C BF145392Ld04P078E04P078E101R1_083.ab1    84 
  707    BF145392Ld04P078E04P078E101F1_083.ab1   563 
  711  C BF145392Ld04P078E04P078E101R1_083.ab1    72 
  723    BF145392Ld04P078E04P078E101F1_083.ab1   579 
  748  C BF145392Ld04P078E04P078E101R1_083.ab1    35 
  764    BF145392Ld04P078E04P078E101F1_083.ab1   620 
Contig length: old 885, new 885

Contig length: old 885, new 885
New start: 0