No. words: 1312; after pruning: 1286


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:628)  605  0.32 0.00 0.16  BF145392Ld05P078E04P078E101F1_096.ab1        1   629 (21)  C BF145392Ld05P078E04P078E101R1_096.ab1   (34)   628     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1  C BF145392Ld05P078E04P078E101R1_096.ab1   662 
   42    BF145392Ld05P078E04P078E101F1_096.ab1     8 
   69  C BF145392Ld05P078E04P078E101R1_096.ab1   595 
   73    BF145392Ld05P078E04P078E101F1_096.ab1    39 
  129  C BF145392Ld05P078E04P078E101R1_096.ab1   535 
  133    BF145392Ld05P078E04P078E101F1_096.ab1    99 
  449  C BF145392Ld05P078E04P078E101R1_096.ab1   215 
  577    BF145392Ld05P078E04P078E101F1_096.ab1   543 
  581  C BF145392Ld05P078E04P078E101R1_096.ab1    83 
  605    BF145392Ld05P078E04P078E101F1_096.ab1   571 
  625  C BF145392Ld05P078E04P078E101R1_096.ab1    39 
  649    BF145392Ld05P078E04P078E101F1_096.ab1   615 
  653  C BF145392Ld05P078E04P078E101R1_096.ab1    11 
  657    BF145392Ld05P078E04P078E101F1_096.ab1   623 
Contig length: old 683, new 684

Contig length: old 684, new 684
New start: 0