No. words: 3121; after pruning: 3069


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   51    0.0 15.2 (1,1:-1)  674  0.29 0.00 0.00  BF145392Ld06P078E04P078E101R1_094.ab1        1   695 (51)    BF145392Ld06P078E04P078E101R1_015.ab1        2   696 (111)  
Merge:(0)   86    0.0 14.5 (1,1:4)  671  0.43 0.00 0.00  BF145392Ld06P078E04P078E101F1_094.ab1        5   699 (86)    BF145392Ld06P078E04P078E101F1_015.ab1        1   695 (88)  
Merge:(0)    0    0.0 14.0 (2,2:634)  619  0.16 0.00 0.00  BF145392Ld06P078E04P078E101F1_094.ab1        1   636 (149)  C BF145392Ld06P078E04P078E101R1_015.ab1   (171)   636     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       1        0
51       1        0
86       1        0

Offset
  0       6 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1926 nodes

 366 str. conn. components

Path
    1  C BF145392Ld06P078E04P078E101R1_015.ab1   807 
  222    BF145392Ld06P078E04P078E101F1_094.ab1    51 
  224  C BF145392Ld06P078E04P078E101R1_015.ab1   584 
  234    BF145392Ld06P078E04P078E101F1_094.ab1    63 
  246  C BF145392Ld06P078E04P078E101R1_015.ab1   562 
  258    BF145392Ld06P078E04P078E101F1_094.ab1    87 
  262  C BF145392Ld06P078E04P078E101R1_015.ab1   546 
  284    BF145392Ld06P078E04P078E101F1_094.ab1   113 
  288  C BF145392Ld06P078E04P078E101R1_015.ab1   520 
  290    BF145392Ld06P078E04P078E101F1_094.ab1   119 
  300  C BF145392Ld06P078E04P078E101R1_015.ab1   508 
  310    BF145392Ld06P078E04P078E101F1_094.ab1   139 
  596  C BF145392Ld06P078E04P078E101R1_094.ab1   211 
  676    BF145392Ld06P078E04P078E101F1_094.ab1   505 
  684    BF145392Ld06P078E04P078E101F1_015.ab1   509 
  700  C BF145392Ld06P078E04P078E101R1_094.ab1   107 
  716    BF145392Ld06P078E04P078E101F1_015.ab1   541 
  724  C BF145392Ld06P078E04P078E101R1_094.ab1    83 
  732    BF145392Ld06P078E04P078E101F1_015.ab1   557 
  740  C BF145392Ld06P078E04P078E101R1_094.ab1    67 
  748    BF145392Ld06P078E04P078E101F1_015.ab1   573 
  750    BF145392Ld06P078E04P078E101F1_094.ab1   579 
  760    BF145392Ld06P078E04P078E101F1_015.ab1   585 
Contig length: old 958, new 958

Contig length: old 958, new 958
New start: 0