No. words: 1591; after pruning: 1565


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 13.5 (1,1:635)  618  0.16 0.00 0.00  BF145392Ld12P078E04P078E101F1_028.ab1        2   636 (177)  C BF145392Ld12P078E04P078E101R1_028.ab1   (143)   635     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1  C BF145392Ld12P078E04P078E101R1_028.ab1   778 
  200    BF145392Ld12P078E04P078E101F1_028.ab1    58 
  204  C BF145392Ld12P078E04P078E101R1_028.ab1   575 
  212    BF145392Ld12P078E04P078E101F1_028.ab1    70 
  216  C BF145392Ld12P078E04P078E101R1_028.ab1   563 
  240    BF145392Ld12P078E04P078E101F1_028.ab1    98 
  244  C BF145392Ld12P078E04P078E101R1_028.ab1   535 
  252    BF145392Ld12P078E04P078E101F1_028.ab1   110 
  260  C BF145392Ld12P078E04P078E101R1_028.ab1   519 
  280    BF145392Ld12P078E04P078E101F1_028.ab1   138 
  312  C BF145392Ld12P078E04P078E101R1_028.ab1   467 
  384    BF145392Ld12P078E04P078E101F1_028.ab1   242 
  436  C BF145392Ld12P078E04P078E101R1_028.ab1   343 
  456    BF145392Ld12P078E04P078E101F1_028.ab1   314 
  664  C BF145392Ld12P078E04P078E101R1_028.ab1   115 
  676    BF145392Ld12P078E04P078E101F1_028.ab1   534 
  708  C BF145392Ld12P078E04P078E101R1_028.ab1    71 
  724    BF145392Ld12P078E04P078E101F1_028.ab1   582 
Contig length: old 955, new 955

Contig length: old 955, new 955
New start: 0