No. words: 779; after pruning: 753


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 3.4 (1,1:216)  205  0.47 0.47 0.00  BF146198Ld05P129A06P129A121F1_095.ab1        4   217 (185)  C BF146198Ld05P129A06P129A121R1_095.ab1   (162)   215     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  102 nodes

 53 str. conn. components

Path
    1  C BF146198Ld05P129A06P129A121R1_095.ab1   377 
  257    BF146198Ld05P129A06P129A121F1_095.ab1    97 
  265  C BF146198Ld05P129A06P129A121R1_095.ab1   113 
  273    BF146198Ld05P129A06P129A121F1_095.ab1   113 
  293  C BF146198Ld05P129A06P129A121R1_095.ab1    85 
  305    BF146198Ld05P129A06P129A121F1_095.ab1   145 
Contig length: old 562, new 562

Contig length: old 562, new 562
New start: 0