No. words: 1000; after pruning: 974


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 5.5 (1,1:471)  442  0.21 0.64 0.21  BF200549Td01P059G05P027G071F1_079.ab1        1   468 (32)  C BF200549Td01P059G05P027G071R1_079.ab1   (26)   474     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  222 nodes

 113 str. conn. components

Path
    1  C BF200549Td01P059G05P027G071R1_079.ab1   500 
  118    BF200549Td01P059G05P027G071F1_079.ab1    89 
  126  C BF200549Td01P059G05P027G071R1_079.ab1   375 
  170    BF200549Td01P059G05P027G071F1_079.ab1   141 
  190  C BF200549Td01P059G05P027G071R1_079.ab1   311 
  222    BF200549Td01P059G05P027G071F1_079.ab1   193 
  250  C BF200549Td01P059G05P027G071R1_079.ab1   251 
  254    BF200549Td01P059G05P027G071F1_079.ab1   225 
Contig length: old 528, new 529

Contig length: old 529, new 529
New start: 0