No. words: 373; after pruning: 347


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    3   -1.3 -1.3 (1,1:129)   55 16.00 0.80 0.80  BF200563Sn29P027H01P059C061F1_024.ab1        4   128 (53)  C BF200563Sn29P027H01P059C061R1_024.ab1   (66)   126     2 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.3       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  14 nodes

 9 str. conn. components

Path
    1  C BF200563Sn29P027H01P059C061R1_024.ab1   192 
  121    BF200563Sn29P027H01P059C061F1_024.ab1    58 
Contig length: old 243, new 244

Contig length: old 244, new 244
New start: 0 
S Change at: 74; seg lengths: entry 4, contig 4
S Change at: 85; seg lengths: entry 1, contig 1
S Change at: 91; seg lengths: entry 7, contig 7
S Change at: 116; seg lengths: entry 2, contig 2
S Change at: 138; seg lengths: entry 3, contig 3
D Change at: 156; seg lengths: entry 0, contig 1
I Change at: 167; seg lengths: entry 9, contig 8