No. words: 327; after pruning: 301


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    3   -1.2 -1.2 (1,1:80)   40 15.79 0.00 0.00  BF200563Td04P027H01P059C061F1_009.ab1        4    79 (51)  C BF200563Td04P027H01P059C061R1_009.ab1   (119)    78     3 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.2       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  10 nodes

 7 str. conn. components

Path
    1  C BF200563Td04P027H01P059C061R1_009.ab1   197 
  170    BF200563Td04P027H01P059C061F1_009.ab1    54 
Contig length: old 246, new 246

Contig length: old 246, new 246
New start: 0 
S Change at: 127; seg lengths: entry 1, contig 1
S Change at: 134; seg lengths: entry 3, contig 3
S Change at: 141; seg lengths: entry 1, contig 1
S Change at: 184; seg lengths: entry 1, contig 1
S Change at: 188; seg lengths: entry 1, contig 1