No. words: 1574; after pruning: 1534


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.3 (1,1:840)  721  0.14 0.00 0.00  BF200774Ld04P003F06P003F121F1_026.ab1       46   778 (0)  C BF200774Ld04P003F06P003F121R1_026.ab1   (0)   796    64 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  366 nodes

 185 str. conn. components

Path
    1    BF200774Ld04P003F06P003F121F1_026.ab1     1 
  281  C BF200774Ld04P003F06P003F121R1_026.ab1   561 
  309    BF200774Ld04P003F06P003F121F1_026.ab1   309 
  317  C BF200774Ld04P003F06P003F121R1_026.ab1   525 
  329    BF200774Ld04P003F06P003F121F1_026.ab1   329 
  353  C BF200774Ld04P003F06P003F121R1_026.ab1   489 
  361    BF200774Ld04P003F06P003F121F1_026.ab1   361 
  365  C BF200774Ld04P003F06P003F121R1_026.ab1   477 
  401    BF200774Ld04P003F06P003F121F1_026.ab1   401 
  409  C BF200774Ld04P003F06P003F121R1_026.ab1   433 
  529    BF200774Ld04P003F06P003F121F1_026.ab1   529 
  533  C BF200774Ld04P003F06P003F121R1_026.ab1   309 
  565    BF200774Ld04P003F06P003F121F1_026.ab1   565 
  581  C BF200774Ld04P003F06P003F121R1_026.ab1   261 
Contig length: old 841, new 841

Contig length: old 841, new 841
New start: 0