No. words: 1603; after pruning: 1563


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.7 (1,1:847)  743  0.13 0.00 0.00  BF200774Ld12P003F06P003F121F1_041.ab1       46   800 (0)  C BF200774Ld12P003F06P003F121R1_041.ab1   (0)   803    49 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  376 nodes

 190 str. conn. components

Path
    1    BF200774Ld12P003F06P003F121F1_041.ab1     1 
  293  C BF200774Ld12P003F06P003F121R1_041.ab1   556 
  297    BF200774Ld12P003F06P003F121F1_041.ab1   297 
  325  C BF200774Ld12P003F06P003F121R1_041.ab1   524 
  333    BF200774Ld12P003F06P003F121F1_041.ab1   333 
  345  C BF200774Ld12P003F06P003F121R1_041.ab1   504 
  361    BF200774Ld12P003F06P003F121F1_041.ab1   361 
  365  C BF200774Ld12P003F06P003F121R1_041.ab1   484 
  381    BF200774Ld12P003F06P003F121F1_041.ab1   381 
  389  C BF200774Ld12P003F06P003F121R1_041.ab1   460 
Contig length: old 848, new 848

Contig length: old 848, new 848
New start: 0