No. words: 1648; after pruning: 1622


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:1157)  472  0.00 0.00 0.00  BF200942Sn30P034D07P003F101F1_070.ab1      294   783 (0)  C BF200942Sn30P034D07P003F101R1_070.ab1   (0)   865   376 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1    BF200942Sn30P034D07P003F101F1_070.ab1     1 
  393  C BF200942Sn30P034D07P003F101R1_070.ab1   766 
  397    BF200942Sn30P034D07P003F101F1_070.ab1   397 
  405  C BF200942Sn30P034D07P003F101R1_070.ab1   754 
  409    BF200942Sn30P034D07P003F101F1_070.ab1   409 
  473  C BF200942Sn30P034D07P003F101R1_070.ab1   686 
  477    BF200942Sn30P034D07P003F101F1_070.ab1   477 
  501  C BF200942Sn30P034D07P003F101R1_070.ab1   658 
  533    BF200942Sn30P034D07P003F101F1_070.ab1   533 
  545  C BF200942Sn30P034D07P003F101R1_070.ab1   614 
  549    BF200942Sn30P034D07P003F101F1_070.ab1   549 
  561  C BF200942Sn30P034D07P003F101R1_070.ab1   598 
Contig length: old 1158, new 1158

Contig length: old 1158, new 1158
New start: 0