No. words: 1572; after pruning: 1546


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:1171)  385  0.00 0.00 0.00  BF200942Sn31P034D07P003F101F1_068.ab1      360   759 (0)  C BF200942Sn31P034D07P003F101R1_068.ab1   (0)   813   414 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  202 nodes

 103 str. conn. components

Path
    1    BF200942Sn31P034D07P003F101F1_068.ab1     1 
  511  C BF200942Sn31P034D07P003F101R1_068.ab1   662 
  519    BF200942Sn31P034D07P003F101F1_068.ab1   519 
  523  C BF200942Sn31P034D07P003F101R1_068.ab1   650 
  555    BF200942Sn31P034D07P003F101F1_068.ab1   555 
  563  C BF200942Sn31P034D07P003F101R1_068.ab1   610 
  599    BF200942Sn31P034D07P003F101F1_068.ab1   599 
  607  C BF200942Sn31P034D07P003F101R1_068.ab1   566 
Contig length: old 1172, new 1172

Contig length: old 1172, new 1172
New start: 0