No. words: 1617; after pruning: 1591


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.0 (1,1:1092)  493  0.00 0.19 0.19  BF200942Sn31P034H06P003F101F1_032.ab1      348   867 (3)  C BF200942Sn31P034H06P003F101R1_032.ab1   (0)   747   228 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1    BF200942Sn31P034H06P003F101F1_032.ab1     1 
  458  C BF200942Sn31P034H06P003F101R1_032.ab1   636 
  466    BF200942Sn31P034H06P003F101F1_032.ab1   466 
  478  C BF200942Sn31P034H06P003F101R1_032.ab1   616 
  486    BF200942Sn31P034H06P003F101F1_032.ab1   486 
  498  C BF200942Sn31P034H06P003F101R1_032.ab1   596 
  502    BF200942Sn31P034H06P003F101F1_032.ab1   502 
  574  C BF200942Sn31P034H06P003F101R1_032.ab1   520 
  582    BF200942Sn31P034H06P003F101F1_032.ab1   582 
  602  C BF200942Sn31P034H06P003F101R1_032.ab1   492 
Contig length: old 1093, new 1093

Contig length: old 1093, new 1093
New start: 0