No. words: 1400; after pruning: 1374


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.9 (1,1:703)  612  0.31 0.00 0.00  BF202765At01P078A05P078A111F1_050.ab1        1   636 (0)  C BF202765At01P078A05P078A111R1_050.ab1   (60)   704    69 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  314 nodes

 159 str. conn. components

Path
    1  C BF202765At01P078A05P078A111R1_050.ab1   764 
   64    BF202765At01P078A05P078A111F1_050.ab1     4 
   68  C BF202765At01P078A05P078A111R1_050.ab1   697 
   78    BF202765At01P078A05P078A111F1_050.ab1    18 
   97  C BF202765At01P078A05P078A111R1_050.ab1   668 
  101    BF202765At01P078A05P078A111F1_050.ab1    41 
  105  C BF202765At01P078A05P078A111R1_050.ab1   660 
  109    BF202765At01P078A05P078A111F1_050.ab1    49 
  129  C BF202765At01P078A05P078A111R1_050.ab1   636 
  137    BF202765At01P078A05P078A111F1_050.ab1    77 
  157  C BF202765At01P078A05P078A111R1_050.ab1   608 
  161    BF202765At01P078A05P078A111F1_050.ab1   101 
  185  C BF202765At01P078A05P078A111R1_050.ab1   580 
  189    BF202765At01P078A05P078A111F1_050.ab1   129 
  209  C BF202765At01P078A05P078A111R1_050.ab1   556 
  213    BF202765At01P078A05P078A111F1_050.ab1   153 
  225  C BF202765At01P078A05P078A111R1_050.ab1   540 
  261    BF202765At01P078A05P078A111F1_050.ab1   201 
  265  C BF202765At01P078A05P078A111R1_050.ab1   500 
  273    BF202765At01P078A05P078A111F1_050.ab1   213 
  313  C BF202765At01P078A05P078A111R1_050.ab1   452 
  317    BF202765At01P078A05P078A111F1_050.ab1   257 
  325  C BF202765At01P078A05P078A111R1_050.ab1   440 
  341    BF202765At01P078A05P078A111F1_050.ab1   281 
  345  C BF202765At01P078A05P078A111R1_050.ab1   420 
  353    BF202765At01P078A05P078A111F1_050.ab1   293 
  357  C BF202765At01P078A05P078A111R1_050.ab1   408 
  377    BF202765At01P078A05P078A111F1_050.ab1   317 
  385  C BF202765At01P078A05P078A111R1_050.ab1   380 
  397    BF202765At01P078A05P078A111F1_050.ab1   337 
  405  C BF202765At01P078A05P078A111R1_050.ab1   360 
  417    BF202765At01P078A05P078A111F1_050.ab1   357 
  421  C BF202765At01P078A05P078A111R1_050.ab1   344 
Contig length: old 764, new 764

Contig length: old 764, new 764
New start: 0 
S Change at: 89; seg lengths: entry 1, contig 1