No. words: 1522; after pruning: 1496


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 15.7 (1,1:746)  700  0.27 0.14 0.00  BF202765At02P078A05P078A111F1_079.ab1        1   733 (5)  C BF202765At02P078A05P078A111R1_079.ab1   (37)   747    14 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  362 nodes

 183 str. conn. components

Path
    1  C BF202765At02P078A05P078A111R1_079.ab1   784 
   41    BF202765At02P078A05P078A111F1_079.ab1     4 
  200  C BF202765At02P078A05P078A111R1_079.ab1   584 
  204    BF202765At02P078A05P078A111F1_079.ab1   167 
  228  C BF202765At02P078A05P078A111R1_079.ab1   556 
  244    BF202765At02P078A05P078A111F1_079.ab1   207 
  260  C BF202765At02P078A05P078A111R1_079.ab1   524 
  264    BF202765At02P078A05P078A111F1_079.ab1   227 
  268  C BF202765At02P078A05P078A111R1_079.ab1   516 
  272    BF202765At02P078A05P078A111F1_079.ab1   235 
  332  C BF202765At02P078A05P078A111R1_079.ab1   452 
  340    BF202765At02P078A05P078A111F1_079.ab1   303 
  348  C BF202765At02P078A05P078A111R1_079.ab1   436 
  352    BF202765At02P078A05P078A111F1_079.ab1   315 
  356  C BF202765At02P078A05P078A111R1_079.ab1   428 
  376    BF202765At02P078A05P078A111F1_079.ab1   339 
  384  C BF202765At02P078A05P078A111R1_079.ab1   400 
  392    BF202765At02P078A05P078A111F1_079.ab1   355 
  400  C BF202765At02P078A05P078A111R1_079.ab1   384 
  412    BF202765At02P078A05P078A111F1_079.ab1   375 
  420  C BF202765At02P078A05P078A111R1_079.ab1   364 
  444    BF202765At02P078A05P078A111F1_079.ab1   407 
  448  C BF202765At02P078A05P078A111R1_079.ab1   336 
  580    BF202765At02P078A05P078A111F1_079.ab1   543 
  584  C BF202765At02P078A05P078A111R1_079.ab1   200 
Contig length: old 784, new 783

Contig length: old 783, new 784
New start: 0 
I Change at: 50; seg lengths: entry 4, contig 3