No. words: 1800; after pruning: 1774


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.7 (1,1:750)  728  0.00 0.00 0.00  BF202765Ld10P078A05P078A111F1_058.ab1        1   751 (142)  C BF202765Ld10P078A05P078A111R1_058.ab1   (156)   751     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  378 nodes

 191 str. conn. components

Path
    1  C BF202765Ld10P078A05P078A111R1_058.ab1   907 
  160    BF202765Ld10P078A05P078A111F1_058.ab1     4 
  164  C BF202765Ld10P078A05P078A111R1_058.ab1   744 
  168    BF202765Ld10P078A05P078A111F1_058.ab1    12 
  172  C BF202765Ld10P078A05P078A111R1_058.ab1   736 
  176    BF202765Ld10P078A05P078A111F1_058.ab1    20 
  180  C BF202765Ld10P078A05P078A111R1_058.ab1   728 
  184    BF202765Ld10P078A05P078A111F1_058.ab1    28 
  188  C BF202765Ld10P078A05P078A111R1_058.ab1   720 
  192    BF202765Ld10P078A05P078A111F1_058.ab1    36 
  200  C BF202765Ld10P078A05P078A111R1_058.ab1   708 
  204    BF202765Ld10P078A05P078A111F1_058.ab1    48 
  236  C BF202765Ld10P078A05P078A111R1_058.ab1   672 
  252    BF202765Ld10P078A05P078A111F1_058.ab1    96 
  272  C BF202765Ld10P078A05P078A111R1_058.ab1   636 
  384    BF202765Ld10P078A05P078A111F1_058.ab1   228 
  520  C BF202765Ld10P078A05P078A111R1_058.ab1   388 
  528    BF202765Ld10P078A05P078A111F1_058.ab1   372 
  576  C BF202765Ld10P078A05P078A111R1_058.ab1   332 
  632    BF202765Ld10P078A05P078A111F1_058.ab1   476 
  660  C BF202765Ld10P078A05P078A111R1_058.ab1   248 
  696    BF202765Ld10P078A05P078A111F1_058.ab1   540 
  752  C BF202765Ld10P078A05P078A111R1_058.ab1   156 
  796    BF202765Ld10P078A05P078A111F1_058.ab1   640 
  804  C BF202765Ld10P078A05P078A111R1_058.ab1   104 
  808    BF202765Ld10P078A05P078A111F1_058.ab1   652 
  816  C BF202765Ld10P078A05P078A111R1_058.ab1    92 
  820    BF202765Ld10P078A05P078A111F1_058.ab1   664 
  828  C BF202765Ld10P078A05P078A111R1_058.ab1    80 
  856    BF202765Ld10P078A05P078A111F1_058.ab1   700 
  868  C BF202765Ld10P078A05P078A111R1_058.ab1    40 
  876    BF202765Ld10P078A05P078A111F1_058.ab1   720 
  884  C BF202765Ld10P078A05P078A111R1_058.ab1    24 
  888    BF202765Ld10P078A05P078A111F1_058.ab1   732 
Contig length: old 1049, new 1049

Contig length: old 1049, new 1049
New start: 0