No. words: 1808; after pruning: 1768


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 15.3 (1,1:756)  724  0.13 0.00 0.13  BF202765Ld12P078A05P078A111F1_054.ab1        1   754 (132)  C BF202765Ld12P078A05P078A111R1_054.ab1   (166)   756     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  374 nodes

 189 str. conn. components

Path
    1  C BF202765Ld12P078A05P078A111R1_054.ab1   922 
  186    BF202765Ld12P078A05P078A111F1_054.ab1    20 
  190  C BF202765Ld12P078A05P078A111R1_054.ab1   733 
  194    BF202765Ld12P078A05P078A111F1_054.ab1    28 
  198  C BF202765Ld12P078A05P078A111R1_054.ab1   725 
  220    BF202765Ld12P078A05P078A111F1_054.ab1    54 
  248  C BF202765Ld12P078A05P078A111R1_054.ab1   675 
  264    BF202765Ld12P078A05P078A111F1_054.ab1    98 
  528  C BF202765Ld12P078A05P078A111R1_054.ab1   395 
  532    BF202765Ld12P078A05P078A111F1_054.ab1   366 
  668  C BF202765Ld12P078A05P078A111R1_054.ab1   255 
  820    BF202765Ld12P078A05P078A111F1_054.ab1   654 
  828  C BF202765Ld12P078A05P078A111R1_054.ab1    95 
  876    BF202765Ld12P078A05P078A111F1_054.ab1   710 
  880  C BF202765Ld12P078A05P078A111R1_054.ab1    43 
  884    BF202765Ld12P078A05P078A111F1_054.ab1   718 
  909  C BF202765Ld12P078A05P078A111R1_054.ab1    15 
  913    BF202765Ld12P078A05P078A111F1_054.ab1   747 
Contig length: old 1051, new 1052

Contig length: old 1052, new 1052
New start: 0 
S Change at: 921; seg lengths: entry 1, contig 1