No. words: 1240; after pruning: 1214


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.0 (1,1:460)  437  0.00 0.00 0.43  BF203070Ld09P027C02P027C081F1_016.ab1        1   462 (136)  C BF203070Ld09P027C02P027C081R1_016.ab1   (182)   460     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1  C BF203070Ld09P027C02P027C081R1_016.ab1   642 
  498    BF203070Ld09P027C02P027C081F1_016.ab1   316 
  502  C BF203070Ld09P027C02P027C081R1_016.ab1   141 
  506    BF203070Ld09P027C02P027C081F1_016.ab1   324 
  510  C BF203070Ld09P027C02P027C081R1_016.ab1   133 
  538    BF203070Ld09P027C02P027C081F1_016.ab1   356 
  542  C BF203070Ld09P027C02P027C081R1_016.ab1   101 
  558    BF203070Ld09P027C02P027C081F1_016.ab1   376 
  574  C BF203070Ld09P027C02P027C081R1_016.ab1    69 
  586    BF203070Ld09P027C02P027C081F1_016.ab1   404 
Contig length: old 779, new 780

Contig length: old 780, new 780
New start: 0