No. words: 1080; after pruning: 1054


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 7.4 (1,1:499)  474  0.00 0.40 0.20  BF203070Sn26P059G06P027C081F1_029.ab1        1   499 (41)  C BF203070Sn26P059G06P027C081R1_029.ab1   (39)   501     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C BF203070Sn26P059G06P027C081R1_029.ab1   540 
   64    BF203070Sn26P059G06P027C081F1_029.ab1    23 
   76  C BF203070Sn26P059G06P027C081R1_029.ab1   465 
   80    BF203070Sn26P059G06P027C081F1_029.ab1    39 
  100  C BF203070Sn26P059G06P027C081R1_029.ab1   441 
  104    BF203070Sn26P059G06P027C081F1_029.ab1    63 
  112  C BF203070Sn26P059G06P027C081R1_029.ab1   429 
  116    BF203070Sn26P059G06P027C081F1_029.ab1    75 
  132  C BF203070Sn26P059G06P027C081R1_029.ab1   409 
  264    BF203070Sn26P059G06P027C081F1_029.ab1   223 
  416  C BF203070Sn26P059G06P027C081R1_029.ab1   125 
  504    BF203070Sn26P059G06P027C081F1_029.ab1   463 
  512  C BF203070Sn26P059G06P027C081R1_029.ab1    29 
  520    BF203070Sn26P059G06P027C081F1_029.ab1   479 
Contig length: old 580, new 581

Contig length: old 581, new 581
New start: 0