No. words: 1039; after pruning: 1013


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.8 (1,1:481)  450  1.04 0.21 0.00  BF203070Sn27P059G06P027C081F1_027.ab1        1   481 (57)  C BF203070Sn27P059G06P027C081R1_027.ab1   (19)   482     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C BF203070Sn27P059G06P027C081R1_027.ab1   501 
   23    BF203070Sn27P059G06P027C081F1_027.ab1     4 
   27  C BF203070Sn27P059G06P027C081R1_027.ab1   475 
   42    BF203070Sn27P059G06P027C081F1_027.ab1    22 
  406  C BF203070Sn27P059G06P027C081R1_027.ab1    96 
  418    BF203070Sn27P059G06P027C081F1_027.ab1   398 
  434  C BF203070Sn27P059G06P027C081R1_027.ab1    68 
  454    BF203070Sn27P059G06P027C081F1_027.ab1   434 
  462  C BF203070Sn27P059G06P027C081R1_027.ab1    40 
  482    BF203070Sn27P059G06P027C081F1_027.ab1   462 
Contig length: old 557, new 558

Contig length: old 558, new 558
New start: 0