No. words: 641; after pruning: 615


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -4.8 -4.8 (1,1:278)  124 17.92 0.00 0.00  BF203070Sn29P059F06P027C081F1_086.ab1        1   279 (62)  C BF203070Sn29P059F06P027C081R1_086.ab1   (21)   279     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -10.0 (<20 part: -10.0 (#=50), >20:0.0 (#=0); in HQ: -10.0, out HQ 0.0), match: 5.1  total: -4.9  124 17.92 0.00 0.00  BF203070Sn29P059F06P027C081F1_086.ab1        1   279 (62)  C BF203070Sn29P059F06P027C081R1_086.ab1   (21)   279     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.8       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  32 nodes

 18 str. conn. components

Path
    1  C BF203070Sn29P059F06P027C081R1_086.ab1   300 
   61    BF203070Sn29P059F06P027C081F1_086.ab1    40 
   69  C BF203070Sn29P059F06P027C081R1_086.ab1   232 
  100    BF203070Sn29P059F06P027C081F1_086.ab1    79 
  104  C BF203070Sn29P059F06P027C081R1_086.ab1   197 
  178    BF203070Sn29P059F06P027C081F1_086.ab1   157 
  218  C BF203070Sn29P059F06P027C081R1_086.ab1    83 
  285    BF203070Sn29P059F06P027C081F1_086.ab1   264 
Contig length: old 362, new 362

Contig length: old 362, new 362
New start: 0 
S Change at: 47; seg lengths: entry 1, contig 1
S Change at: 127; seg lengths: entry 1, contig 1
S Change at: 131; seg lengths: entry 1, contig 1
S Change at: 152; seg lengths: entry 1, contig 1
S Change at: 164; seg lengths: entry 5, contig 5
S Change at: 204; seg lengths: entry 1, contig 1
S Change at: 255; seg lengths: entry 4, contig 4
S Change at: 270; seg lengths: entry 1, contig 1
S Change at: 277; seg lengths: entry 5, contig 5