No. words: 832; after pruning: 806


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -0.5 -0.5 (1,1:347)  233 10.06 0.00 0.29  BF203070Ta14P059F06P027C081F1_070.ab1        1   348 (39)  C BF203070Ta14P059F06P027C081R1_070.ab1   (98)   347     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.5       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  88 nodes

 46 str. conn. components

Path
    1  C BF203070Ta14P059F06P027C081R1_070.ab1   445 
  142    BF203070Ta14P059F06P027C081F1_070.ab1    44 
  146  C BF203070Ta14P059F06P027C081R1_070.ab1   300 
  177    BF203070Ta14P059F06P027C081F1_070.ab1    79 
  181  C BF203070Ta14P059F06P027C081R1_070.ab1   265 
  208    BF203070Ta14P059F06P027C081F1_070.ab1   110 
  212  C BF203070Ta14P059F06P027C081R1_070.ab1   234 
  242    BF203070Ta14P059F06P027C081F1_070.ab1   144 
  273  C BF203070Ta14P059F06P027C081R1_070.ab1   173 
  285    BF203070Ta14P059F06P027C081F1_070.ab1   187 
  297  C BF203070Ta14P059F06P027C081R1_070.ab1   149 
  313    BF203070Ta14P059F06P027C081F1_070.ab1   215 
  317  C BF203070Ta14P059F06P027C081R1_070.ab1   129 
  333    BF203070Ta14P059F06P027C081F1_070.ab1   235 
  337  C BF203070Ta14P059F06P027C081R1_070.ab1   109 
  349    BF203070Ta14P059F06P027C081F1_070.ab1   251 
  361  C BF203070Ta14P059F06P027C081R1_070.ab1    85 
  382    BF203070Ta14P059F06P027C081F1_070.ab1   284 
  401  C BF203070Ta14P059F06P027C081R1_070.ab1    45 
  414    BF203070Ta14P059F06P027C081F1_070.ab1   316 
  422  C BF203070Ta14P059F06P027C081R1_070.ab1    24 
  426    BF203070Ta14P059F06P027C081F1_070.ab1   328 
Contig length: old 484, new 485

Contig length: old 485, new 485
New start: 0 
S Change at: 138; seg lengths: entry 1, contig 1
S Change at: 263; seg lengths: entry 1, contig 1
S Change at: 267; seg lengths: entry 1, contig 1