No. words: 698; after pruning: 672


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -3.9 -3.9 (1,1:306)  147 16.94 0.00 0.00  BF203070Ta16P059E06P027C081F1_034.ab1        1   307 (5)  C BF203070Ta16P059E06P027C081R1_034.ab1   (79)   307     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -9.6 (<20 part: -9.6 (#=52), >20:0.0 (#=0); in HQ: -9.6, out HQ 0.0), match: 5.7  total: -3.9  147 16.94 0.00 0.00  BF203070Ta16P059E06P027C081F1_034.ab1        1   307 (5)  C BF203070Ta16P059E06P027C081R1_034.ab1   (79)   307     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.9       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  36 nodes

 20 str. conn. components

Path
    1  C BF203070Ta16P059E06P027C081R1_034.ab1   386 
   96    BF203070Ta16P059E06P027C081F1_034.ab1    17 
  100  C BF203070Ta16P059E06P027C081R1_034.ab1   287 
  251    BF203070Ta16P059E06P027C081F1_034.ab1   172 
  312  C BF203070Ta16P059E06P027C081R1_034.ab1    75 
  342    BF203070Ta16P059E06P027C081F1_034.ab1   263 
  353  C BF203070Ta16P059E06P027C081R1_034.ab1    34 
  361    BF203070Ta16P059E06P027C081F1_034.ab1   282 
Contig length: old 391, new 391

Contig length: old 391, new 391
New start: 0 
S Change at: 195; seg lengths: entry 1, contig 1
S Change at: 218; seg lengths: entry 1, contig 1
S Change at: 243; seg lengths: entry 1, contig 1
S Change at: 291; seg lengths: entry 1, contig 1
S Change at: 324; seg lengths: entry 3, contig 3
S Change at: 334; seg lengths: entry 1, contig 1