No. words: 572; after pruning: 546


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Rjct: (2)    0   -5.7 -5.7 (1,1:278)  116 19.00 0.00 0.00  BF203070Ta16P059F06P027C081F1_066.ab1        1   279 (0)  C BF203070Ta16P059F06P027C081R1_066.ab1   (14)   279     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -10.8 (<20 part: -10.8 (#=53), >20:0.0 (#=0); in HQ: -10.8, out HQ 0.0), match: 5.0  total: -5.8  116 19.00 0.00 0.00  BF203070Ta16P059F06P027C081F1_066.ab1        1   279 (0)  C BF203070Ta16P059F06P027C081R1_066.ab1   (14)   279     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-5.7       0        1

Gap   # merges  # failures
 size
 0       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BF203070Ta16P059F06P027C081R1_066.ab1     1 
Contig length: old 293, new 293

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BF203070Ta16P059F06P027C081F1_066.ab1     1 
Contig length: old 279, new 279