No. words: 323; after pruning: 297


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    2   -2.4 -2.4 (1,1:236)   41 16.67 0.00 0.00  BF203070Ta20P059F06P027C081F1_089.ab1       75   158 (2)  C BF203070Ta20P059F06P027C081R1_089.ab1   (0)   163    80 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.4       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  12 nodes

 8 str. conn. components

Path
    1    BF203070Ta20P059F06P027C081F1_089.ab1     1 
  114  C BF203070Ta20P059F06P027C081R1_089.ab1   124 
  118    BF203070Ta20P059F06P027C081F1_089.ab1   118 
  122  C BF203070Ta20P059F06P027C081R1_089.ab1   116 
Contig length: old 237, new 237

Contig length: old 237, new 237
New start: 0 
S Change at: 81; seg lengths: entry 1, contig 1
S Change at: 89; seg lengths: entry 1, contig 1
S Change at: 99; seg lengths: entry 4, contig 4
S Change at: 129; seg lengths: entry 10, contig 10
S Change at: 142; seg lengths: entry 1, contig 1
S Change at: 154; seg lengths: entry 1, contig 1