No. words: 678; after pruning: 652


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -4.0 -4.0 (1,1:306)  133 18.57 0.00 0.00  BF203070Ta24P059E06P027C081F1_049.ab1        1   307 (17)  C BF203070Ta24P059E06P027C081R1_049.ab1   (47)   307     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -9.6 (<20 part: -9.6 (#=57), >20:0.0 (#=0); in HQ: -9.6, out HQ 0.0), match: 5.6  total: -4.0  133 18.57 0.00 0.00  BF203070Ta24P059E06P027C081F1_049.ab1        1   307 (17)  C BF203070Ta24P059E06P027C081R1_049.ab1   (47)   307     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  38 nodes

 21 str. conn. components

Path
    1  C BF203070Ta24P059E06P027C081R1_049.ab1   354 
   64    BF203070Ta24P059E06P027C081F1_049.ab1    17 
   68  C BF203070Ta24P059E06P027C081R1_049.ab1   287 
  111    BF203070Ta24P059E06P027C081F1_049.ab1    64 
  115  C BF203070Ta24P059E06P027C081R1_049.ab1   240 
  126    BF203070Ta24P059E06P027C081F1_049.ab1    79 
  280  C BF203070Ta24P059E06P027C081R1_049.ab1    75 
  310    BF203070Ta24P059E06P027C081F1_049.ab1   263 
  322  C BF203070Ta24P059E06P027C081R1_049.ab1    33 
  330    BF203070Ta24P059E06P027C081F1_049.ab1   283 
Contig length: old 371, new 371

Contig length: old 371, new 371
New start: 0 
S Change at: 132; seg lengths: entry 1, contig 1
S Change at: 138; seg lengths: entry 3, contig 3
S Change at: 145; seg lengths: entry 1, contig 1
S Change at: 152; seg lengths: entry 5, contig 5
S Change at: 167; seg lengths: entry 7, contig 7
S Change at: 178; seg lengths: entry 1, contig 1
S Change at: 186; seg lengths: entry 9, contig 9
D Change at: 203; seg lengths: entry 0, contig 1
I Change at: 206; seg lengths: entry 1, contig 0
S Change at: 259; seg lengths: entry 1, contig 1
S Change at: 263; seg lengths: entry 1, contig 1
S Change at: 294; seg lengths: entry 1, contig 1
S Change at: 302; seg lengths: entry 1, contig 1