No. words: 486; after pruning: 460


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)   32   -2.4 -2.4 (1,1:273)   80 16.27 0.00 0.00  BF203070Td01P059F06P027C081F1_079.ab1        1   166 (32)  C BF203070Td01P059F06P027C081R1_079.ab1   (14)   274   109 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.4       1        0

Gap   # merges  # failures
 size
32       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  20 nodes

 12 str. conn. components

Path
    1  C BF203070Td01P059F06P027C081R1_079.ab1   288 
   30    BF203070Td01P059F06P027C081F1_079.ab1    16 
   38  C BF203070Td01P059F06P027C081R1_079.ab1   251 
   42    BF203070Td01P059F06P027C081F1_079.ab1    28 
   61  C BF203070Td01P059F06P027C081R1_079.ab1   228 
  145    BF203070Td01P059F06P027C081F1_079.ab1   131 
  165  C BF203070Td01P059F06P027C081R1_079.ab1   124 
Contig length: old 288, new 288

Contig length: old 288, new 288
New start: 0 
S Change at: 48; seg lengths: entry 1, contig 1
S Change at: 53; seg lengths: entry 1, contig 1
S Change at: 98; seg lengths: entry 1, contig 1
S Change at: 121; seg lengths: entry 1, contig 1
S Change at: 131; seg lengths: entry 4, contig 4
S Change at: 173; seg lengths: entry 1, contig 1