No. words: 673; after pruning: 647


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -4.7 -4.7 (1,1:311)  143 17.63 0.00 0.00  BF203070Td06P059E06P027C081F1_037.ab1        1   312 (0)  C BF203070Td06P059E06P027C081R1_037.ab1   (49)   312     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -10.5 (<20 part: -10.5 (#=55), >20:0.0 (#=0); in HQ: -10.5, out HQ 0.0), match: 5.7  total: -4.8  143 17.63 0.00 0.00  BF203070Td06P059E06P027C081F1_037.ab1        1   312 (0)  C BF203070Td06P059E06P027C081R1_037.ab1   (49)   312     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.7       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  38 nodes

 21 str. conn. components

Path
    1  C BF203070Td06P059E06P027C081R1_037.ab1   361 
   66    BF203070Td06P059E06P027C081F1_037.ab1    17 
   70  C BF203070Td06P059E06P027C081R1_037.ab1   292 
  109    BF203070Td06P059E06P027C081F1_037.ab1    60 
  113  C BF203070Td06P059E06P027C081R1_037.ab1   249 
  237    BF203070Td06P059E06P027C081F1_037.ab1   188 
  282  C BF203070Td06P059E06P027C081R1_037.ab1    80 
  312    BF203070Td06P059E06P027C081F1_037.ab1   263 
  323  C BF203070Td06P059E06P027C081R1_037.ab1    39 
  327    BF203070Td06P059E06P027C081F1_037.ab1   278 
Contig length: old 361, new 361

Contig length: old 361, new 361
New start: 0 
S Change at: 165; seg lengths: entry 1, contig 1
S Change at: 184; seg lengths: entry 1, contig 1
S Change at: 188; seg lengths: entry 1, contig 1
S Change at: 213; seg lengths: entry 1, contig 1
S Change at: 221; seg lengths: entry 1, contig 1
S Change at: 225; seg lengths: entry 1, contig 1
S Change at: 261; seg lengths: entry 1, contig 1
S Change at: 265; seg lengths: entry 1, contig 1
S Change at: 294; seg lengths: entry 3, contig 3
S Change at: 304; seg lengths: entry 1, contig 1