No. words: 1111; after pruning: 1085


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 10.9 (1,1:538)  495  0.19 0.00 0.19  BF291720As01P081A01P081A071F1_013.ab1        5   527 (0)  C BF291720As01P081A01P081A071R1_013.ab1   (50)   534    13 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1  C BF291720As01P081A01P081A071R1_013.ab1   584 
   54    BF291720As01P081A01P081A071F1_013.ab1     8 
  338  C BF291720As01P081A01P081A071R1_013.ab1   247 
  342    BF291720As01P081A01P081A071F1_013.ab1   296 
  354  C BF291720As01P081A01P081A071R1_013.ab1   231 
  358    BF291720As01P081A01P081A071F1_013.ab1   312 
  386  C BF291720As01P081A01P081A071R1_013.ab1   199 
  390    BF291720As01P081A01P081A071F1_013.ab1   344 
  410  C BF291720As01P081A01P081A071R1_013.ab1   175 
  530    BF291720As01P081A01P081A071F1_013.ab1   484 
  540  C BF291720As01P081A01P081A071R1_013.ab1    45 
  556    BF291720As01P081A01P081A071F1_013.ab1   510 
  569  C BF291720As01P081A01P081A071R1_013.ab1    17 
Contig length: old 584, new 585

Contig length: old 585, new 585
New start: 0