No. words: 1142; after pruning: 1116


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 10.8 (1,1:517)  495  0.00 0.00 0.00  BF291720As02P081A01P081A071F1_011.ab1        5   518 (62)  C BF291720As02P081A01P081A071R1_011.ab1   (48)   514     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  258 nodes

 131 str. conn. components

Path
    1  C BF291720As02P081A01P081A071R1_011.ab1   562 
   56    BF291720As02P081A01P081A071F1_011.ab1    12 
   60  C BF291720As02P081A01P081A071R1_011.ab1   503 
   76    BF291720As02P081A01P081A071F1_011.ab1    32 
  164  C BF291720As02P081A01P081A071R1_011.ab1   399 
  168    BF291720As02P081A01P081A071F1_011.ab1   124 
  408  C BF291720As02P081A01P081A071R1_011.ab1   155 
  416    BF291720As02P081A01P081A071F1_011.ab1   372 
  420  C BF291720As02P081A01P081A071R1_011.ab1   143 
  436    BF291720As02P081A01P081A071F1_011.ab1   392 
  444  C BF291720As02P081A01P081A071R1_011.ab1   119 
  452    BF291720As02P081A01P081A071F1_011.ab1   408 
  464  C BF291720As02P081A01P081A071R1_011.ab1    99 
  472    BF291720As02P081A01P081A071F1_011.ab1   428 
  484  C BF291720As02P081A01P081A071R1_011.ab1    79 
  488    BF291720As02P081A01P081A071F1_011.ab1   444 
  492  C BF291720As02P081A01P081A071R1_011.ab1    71 
  504    BF291720As02P081A01P081A071F1_011.ab1   460 
  508  C BF291720As02P081A01P081A071R1_011.ab1    55 
  512    BF291720As02P081A01P081A071F1_011.ab1   468 
  520  C BF291720As02P081A01P081A071R1_011.ab1    43 
  524    BF291720As02P081A01P081A071F1_011.ab1   480 
  528  C BF291720As02P081A01P081A071R1_011.ab1    35 
  536    BF291720As02P081A01P081A071F1_011.ab1   492 
  544  C BF291720As02P081A01P081A071R1_011.ab1    19 
  548    BF291720As02P081A01P081A071F1_011.ab1   504 
Contig length: old 624, new 624

Contig length: old 624, new 624
New start: 0