No. words: 1409; after pruning: 1383


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 11.1 (1,1:535)  510  0.19 0.00 0.00  BF291720Ld02P081A01P081A071F1_046.ab1        5   536 (191)  C BF291720Ld02P081A01P081A071R1_046.ab1   (150)   532     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  264 nodes

 134 str. conn. components

Path
    1  C BF291720Ld02P081A01P081A071R1_046.ab1   682 
  198    BF291720Ld02P081A01P081A071F1_046.ab1    52 
  210  C BF291720Ld02P081A01P081A071R1_046.ab1   473 
  218    BF291720Ld02P081A01P081A071F1_046.ab1    72 
  230  C BF291720Ld02P081A01P081A071R1_046.ab1   453 
  238    BF291720Ld02P081A01P081A071F1_046.ab1    92 
  246  C BF291720Ld02P081A01P081A071R1_046.ab1   437 
  250    BF291720Ld02P081A01P081A071F1_046.ab1   104 
  254  C BF291720Ld02P081A01P081A071R1_046.ab1   429 
  266    BF291720Ld02P081A01P081A071F1_046.ab1   120 
  278  C BF291720Ld02P081A01P081A071R1_046.ab1   405 
  286    BF291720Ld02P081A01P081A071F1_046.ab1   140 
  306  C BF291720Ld02P081A01P081A071R1_046.ab1   377 
  314    BF291720Ld02P081A01P081A071F1_046.ab1   168 
  342  C BF291720Ld02P081A01P081A071R1_046.ab1   341 
  346    BF291720Ld02P081A01P081A071F1_046.ab1   200 
  534  C BF291720Ld02P081A01P081A071R1_046.ab1   149 
  582    BF291720Ld02P081A01P081A071F1_046.ab1   436 
  598  C BF291720Ld02P081A01P081A071R1_046.ab1    85 
  611    BF291720Ld02P081A01P081A071F1_046.ab1   465 
  615  C BF291720Ld02P081A01P081A071R1_046.ab1    68 
  619    BF291720Ld02P081A01P081A071F1_046.ab1   473 
  643  C BF291720Ld02P081A01P081A071R1_046.ab1    40 
  651    BF291720Ld02P081A01P081A071F1_046.ab1   505 
Contig length: old 873, new 873

Contig length: old 873, new 873
New start: 0