No. words: 1427; after pruning: 1401


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 10.4 (1,1:556)  523  0.00 0.00 0.36  BF291720Ld03P081A01P081A071F1_044.ab1        5   556 (170)  C BF291720Ld03P081A01P081A071R1_044.ab1   (149)   552     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1  C BF291720Ld03P081A01P081A071R1_044.ab1   701 
  185    BF291720Ld03P081A01P081A071F1_044.ab1    40 
  201  C BF291720Ld03P081A01P081A071R1_044.ab1   501 
  209    BF291720Ld03P081A01P081A071F1_044.ab1    64 
  229  C BF291720Ld03P081A01P081A071R1_044.ab1   473 
  241    BF291720Ld03P081A01P081A071F1_044.ab1    96 
  253  C BF291720Ld03P081A01P081A071R1_044.ab1   449 
  261    BF291720Ld03P081A01P081A071F1_044.ab1   116 
  305  C BF291720Ld03P081A01P081A071R1_044.ab1   397 
  309    BF291720Ld03P081A01P081A071F1_044.ab1   164 
  533  C BF291720Ld03P081A01P081A071R1_044.ab1   169 
  557    BF291720Ld03P081A01P081A071F1_044.ab1   412 
  561  C BF291720Ld03P081A01P081A071R1_044.ab1   141 
  565    BF291720Ld03P081A01P081A071F1_044.ab1   420 
  597  C BF291720Ld03P081A01P081A071R1_044.ab1   105 
  617    BF291720Ld03P081A01P081A071F1_044.ab1   472 
  641  C BF291720Ld03P081A01P081A071R1_044.ab1    61 
  653    BF291720Ld03P081A01P081A071F1_044.ab1   508 
Contig length: old 870, new 871

Contig length: old 871, new 871
New start: 0