No. words: 1379; after pruning: 1353


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:520)  503  0.00 0.00 0.00  BF291720Ld05P081A01P081A071F1_031.ab1        1   521 (186)  C BF291720Ld05P081A01P081A071R1_031.ab1   (151)   521     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C BF291720Ld05P081A01P081A071R1_031.ab1   672 
  211    BF291720Ld05P081A01P081A071F1_031.ab1    60 
  227  C BF291720Ld05P081A01P081A071R1_031.ab1   446 
  243    BF291720Ld05P081A01P081A071F1_031.ab1    92 
  255  C BF291720Ld05P081A01P081A071R1_031.ab1   418 
  267    BF291720Ld05P081A01P081A071F1_031.ab1   116 
  275  C BF291720Ld05P081A01P081A071R1_031.ab1   398 
  279    BF291720Ld05P081A01P081A071F1_031.ab1   128 
  283  C BF291720Ld05P081A01P081A071R1_031.ab1   390 
  291    BF291720Ld05P081A01P081A071F1_031.ab1   140 
  307  C BF291720Ld05P081A01P081A071R1_031.ab1   366 
  311    BF291720Ld05P081A01P081A071F1_031.ab1   160 
  515  C BF291720Ld05P081A01P081A071R1_031.ab1   158 
  519    BF291720Ld05P081A01P081A071F1_031.ab1   368 
  523  C BF291720Ld05P081A01P081A071R1_031.ab1   150 
  535    BF291720Ld05P081A01P081A071F1_031.ab1   384 
  543  C BF291720Ld05P081A01P081A071R1_031.ab1   130 
  551    BF291720Ld05P081A01P081A071F1_031.ab1   400 
  559  C BF291720Ld05P081A01P081A071R1_031.ab1   114 
  571    BF291720Ld05P081A01P081A071F1_031.ab1   420 
  587  C BF291720Ld05P081A01P081A071R1_031.ab1    86 
  591    BF291720Ld05P081A01P081A071F1_031.ab1   440 
  603  C BF291720Ld05P081A01P081A071R1_031.ab1    70 
  607    BF291720Ld05P081A01P081A071F1_031.ab1   456 
Contig length: old 858, new 858

Contig length: old 858, new 858
New start: 0