No. words: 1404; after pruning: 1378


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 11.3 (1,1:533)  514  0.00 0.00 0.00  BF291720Ld06P081A01P081A071F1_029.ab1        3   534 (187)  C BF291720Ld06P081A01P081A071R1_029.ab1   (151)   532     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1  C BF291720Ld06P081A01P081A071R1_029.ab1   683 
  203    BF291720Ld06P081A01P081A071F1_029.ab1    54 
  215  C BF291720Ld06P081A01P081A071R1_029.ab1   469 
  219    BF291720Ld06P081A01P081A071F1_029.ab1    70 
  231  C BF291720Ld06P081A01P081A071R1_029.ab1   453 
  243    BF291720Ld06P081A01P081A071F1_029.ab1    94 
  247  C BF291720Ld06P081A01P081A071R1_029.ab1   437 
  251    BF291720Ld06P081A01P081A071F1_029.ab1   102 
  283  C BF291720Ld06P081A01P081A071R1_029.ab1   401 
  287    BF291720Ld06P081A01P081A071F1_029.ab1   138 
  311  C BF291720Ld06P081A01P081A071R1_029.ab1   373 
  315    BF291720Ld06P081A01P081A071F1_029.ab1   166 
  531  C BF291720Ld06P081A01P081A071R1_029.ab1   153 
  535    BF291720Ld06P081A01P081A071F1_029.ab1   386 
  543  C BF291720Ld06P081A01P081A071R1_029.ab1   141 
  547    BF291720Ld06P081A01P081A071F1_029.ab1   398 
  551  C BF291720Ld06P081A01P081A071R1_029.ab1   133 
  563    BF291720Ld06P081A01P081A071F1_029.ab1   414 
  615  C BF291720Ld06P081A01P081A071R1_029.ab1    69 
  619    BF291720Ld06P081A01P081A071F1_029.ab1   470 
Contig length: old 870, new 870

Contig length: old 870, new 870
New start: 0