No. words: 1372; after pruning: 1346


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.3 (1,1:533)  506  0.00 0.00 0.37  BF291720Ld08P081A01P081A071F1_025.ab1        1   535 (163)  C BF291720Ld08P081A01P081A071R1_025.ab1   (141)   533     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C BF291720Ld08P081A01P081A071R1_025.ab1   674 
  185    BF291720Ld08P081A01P081A071F1_025.ab1    44 
  193  C BF291720Ld08P081A01P081A071R1_025.ab1   482 
  209    BF291720Ld08P081A01P081A071F1_025.ab1    68 
  217  C BF291720Ld08P081A01P081A071R1_025.ab1   458 
  241    BF291720Ld08P081A01P081A071F1_025.ab1   100 
  257  C BF291720Ld08P081A01P081A071R1_025.ab1   418 
  261    BF291720Ld08P081A01P081A071F1_025.ab1   120 
  273  C BF291720Ld08P081A01P081A071R1_025.ab1   402 
  277    BF291720Ld08P081A01P081A071F1_025.ab1   136 
  505  C BF291720Ld08P081A01P081A071R1_025.ab1   170 
  525    BF291720Ld08P081A01P081A071F1_025.ab1   384 
  533  C BF291720Ld08P081A01P081A071R1_025.ab1   142 
  537    BF291720Ld08P081A01P081A071F1_025.ab1   396 
  545  C BF291720Ld08P081A01P081A071R1_025.ab1   130 
  561    BF291720Ld08P081A01P081A071F1_025.ab1   420 
  581  C BF291720Ld08P081A01P081A071R1_025.ab1    94 
  593    BF291720Ld08P081A01P081A071F1_025.ab1   452 
  621  C BF291720Ld08P081A01P081A071R1_025.ab1    54 
  625    BF291720Ld08P081A01P081A071F1_025.ab1   484 
Contig length: old 838, new 839

Contig length: old 839, new 839
New start: 0