No. words: 1379; after pruning: 1353


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:534)  503  0.00 0.00 0.56  BF291720Ld09P081A01P081A071F1_023.ab1        1   537 (165)  C BF291720Ld09P081A01P081A071R1_023.ab1   (143)   534     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C BF291720Ld09P081A01P081A071R1_023.ab1   677 
  203    BF291720Ld09P081A01P081A071F1_023.ab1    60 
  223  C BF291720Ld09P081A01P081A071R1_023.ab1   455 
  235    BF291720Ld09P081A01P081A071F1_023.ab1    92 
  275  C BF291720Ld09P081A01P081A071R1_023.ab1   403 
  283    BF291720Ld09P081A01P081A071F1_023.ab1   140 
  303  C BF291720Ld09P081A01P081A071R1_023.ab1   375 
  307    BF291720Ld09P081A01P081A071F1_023.ab1   164 
  507  C BF291720Ld09P081A01P081A071R1_023.ab1   171 
  527    BF291720Ld09P081A01P081A071F1_023.ab1   384 
  539  C BF291720Ld09P081A01P081A071R1_023.ab1   139 
  543    BF291720Ld09P081A01P081A071F1_023.ab1   400 
  551  C BF291720Ld09P081A01P081A071R1_023.ab1   127 
  567    BF291720Ld09P081A01P081A071F1_023.ab1   424 
  587  C BF291720Ld09P081A01P081A071R1_023.ab1    91 
  595    BF291720Ld09P081A01P081A071F1_023.ab1   452 
Contig length: old 844, new 845

Contig length: old 845, new 845
New start: 0