No. words: 1412; after pruning: 1386


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 9.5 (1,1:552)  508  0.36 0.00 0.55  BF291720Ld10P081A01P081A071F1_021.ab1        5   553 (167)  C BF291720Ld10P081A01P081A071R1_021.ab1   (144)   548     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C BF291720Ld10P081A01P081A071R1_021.ab1   692 
  180    BF291720Ld10P081A01P081A071F1_021.ab1    40 
  204  C BF291720Ld10P081A01P081A071R1_021.ab1   489 
  212    BF291720Ld10P081A01P081A071F1_021.ab1    72 
  224  C BF291720Ld10P081A01P081A071R1_021.ab1   469 
  236    BF291720Ld10P081A01P081A071F1_021.ab1    96 
  240  C BF291720Ld10P081A01P081A071R1_021.ab1   453 
  272    BF291720Ld10P081A01P081A071F1_021.ab1   132 
  276  C BF291720Ld10P081A01P081A071R1_021.ab1   417 
  284    BF291720Ld10P081A01P081A071F1_021.ab1   144 
  296  C BF291720Ld10P081A01P081A071R1_021.ab1   397 
  304    BF291720Ld10P081A01P081A071F1_021.ab1   164 
  532  C BF291720Ld10P081A01P081A071R1_021.ab1   161 
  540    BF291720Ld10P081A01P081A071F1_021.ab1   400 
  552  C BF291720Ld10P081A01P081A071R1_021.ab1   141 
  580    BF291720Ld10P081A01P081A071F1_021.ab1   440 
Contig length: old 859, new 860

Contig length: old 860, new 860
New start: 0