No. words: 1392; after pruning: 1366


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 10.6 (1,1:539)  515  0.00 0.00 0.19  BF291720Ld11P081A01P081A071F1_019.ab1        1   537 (167)  C BF291720Ld11P081A01P081A071R1_019.ab1   (149)   539     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  264 nodes

 134 str. conn. components

Path
    1  C BF291720Ld11P081A01P081A071R1_019.ab1   688 
  189    BF291720Ld11P081A01P081A071F1_019.ab1    40 
  193  C BF291720Ld11P081A01P081A071R1_019.ab1   496 
  209    BF291720Ld11P081A01P081A071F1_019.ab1    60 
  229  C BF291720Ld11P081A01P081A071R1_019.ab1   460 
  241    BF291720Ld11P081A01P081A071F1_019.ab1    92 
  253  C BF291720Ld11P081A01P081A071R1_019.ab1   436 
  261    BF291720Ld11P081A01P081A071F1_019.ab1   112 
  269  C BF291720Ld11P081A01P081A071R1_019.ab1   420 
  277    BF291720Ld11P081A01P081A071F1_019.ab1   128 
  281  C BF291720Ld11P081A01P081A071R1_019.ab1   408 
  289    BF291720Ld11P081A01P081A071F1_019.ab1   140 
  305  C BF291720Ld11P081A01P081A071R1_019.ab1   384 
  309    BF291720Ld11P081A01P081A071F1_019.ab1   160 
  513  C BF291720Ld11P081A01P081A071R1_019.ab1   176 
  569    BF291720Ld11P081A01P081A071F1_019.ab1   420 
  581  C BF291720Ld11P081A01P081A071R1_019.ab1   108 
  585    BF291720Ld11P081A01P081A071F1_019.ab1   436 
  629  C BF291720Ld11P081A01P081A071R1_019.ab1    60 
  637    BF291720Ld11P081A01P081A071F1_019.ab1   488 
Contig length: old 852, new 853

Contig length: old 853, new 853
New start: 0