No. words: 1414; after pruning: 1388


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 11.4 (1,1:539)  518  0.00 0.00 0.00  BF291720Ld12P081A01P081A071F1_017.ab1        5   540 (188)  C BF291720Ld12P081A01P081A071R1_017.ab1   (150)   536     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1  C BF291720Ld12P081A01P081A071R1_017.ab1   686 
  190    BF291720Ld12P081A01P081A071F1_017.ab1    44 
  194  C BF291720Ld12P081A01P081A071R1_017.ab1   493 
  198    BF291720Ld12P081A01P081A071F1_017.ab1    52 
  210  C BF291720Ld12P081A01P081A071R1_017.ab1   477 
  218    BF291720Ld12P081A01P081A071F1_017.ab1    72 
  230  C BF291720Ld12P081A01P081A071R1_017.ab1   457 
  242    BF291720Ld12P081A01P081A071F1_017.ab1    96 
  246  C BF291720Ld12P081A01P081A071R1_017.ab1   441 
  266    BF291720Ld12P081A01P081A071F1_017.ab1   120 
  282  C BF291720Ld12P081A01P081A071R1_017.ab1   405 
  290    BF291720Ld12P081A01P081A071F1_017.ab1   144 
  302  C BF291720Ld12P081A01P081A071R1_017.ab1   385 
  306    BF291720Ld12P081A01P081A071F1_017.ab1   160 
  538  C BF291720Ld12P081A01P081A071R1_017.ab1   149 
  546    BF291720Ld12P081A01P081A071F1_017.ab1   400 
  554  C BF291720Ld12P081A01P081A071R1_017.ab1   133 
  590    BF291720Ld12P081A01P081A071F1_017.ab1   444 
Contig length: old 874, new 874

Contig length: old 874, new 874
New start: 0