No. words: 1779; after pruning: 1753


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.9 (1,1:1586)  185  0.52 0.00 0.00  BF291730Ld01P081B01P081B071F1_019.ab1      688   879 (0)  C BF291730Ld01P081B01P081B071R1_019.ab1   (0)   900   709 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  94 nodes

 49 str. conn. components

Path
    1    BF291730Ld01P081B01P081B071F1_019.ab1     1 
  777  C BF291730Ld01P081B01P081B071R1_019.ab1   811 
  789    BF291730Ld01P081B01P081B071F1_019.ab1   789 
  797  C BF291730Ld01P081B01P081B071R1_019.ab1   791 
  809    BF291730Ld01P081B01P081B071F1_019.ab1   809 
  813  C BF291730Ld01P081B01P081B071R1_019.ab1   775 
  829    BF291730Ld01P081B01P081B071F1_019.ab1   829 
  833  C BF291730Ld01P081B01P081B071R1_019.ab1   755 
Contig length: old 1587, new 1587

Contig length: old 1587, new 1587
New start: 0